Performs the differential exon usage test in a single command — DEXSeq • DEXSeq

This function is a wrapper that calls the necessary functions to perform a differential exon usage test in a single command.

Usage

DEXSeq(object, 
    fullModel=design(object),
    reducedModel = ~ sample + exon, 
    BPPARAM=MulticoreParam(workers=1), 
    fitExpToVar="condition", quiet=TRUE )

Arguments

object: An DEXSeqDataSet object.
fullModel: The full model formula
reducedModel: Null model formula.
BPPARAM: A "BiocParallelParam" instance. See ?bplapply for details.
fitExpToVar: A variable name contained in the sample data. The expression values will be fitted to this variable using the the formula " ~ sample + fitExpToVar * exon".
quiet: Whether to print messages at each step

Value

A DEXSeqResults object.

Examples

  if (FALSE) { # \dontrun{
      data(pasillaDEXSeqDataSet, package="pasilla")
      dxr <- DEXSeq( dxd )
  } # }