DEXSeqResults object

The DEXSeqResults object is a subclass of a DataFrame. It collects relevant information from a DEXSeqDataSet object with the results generated from testing for differences in exon usage.

Usage

DEXSeqResults( object, independentFiltering=TRUE, filter)

Arguments

object

A DEXSeqDataSet object.

independentFiltering

Logical indicating whether independent filtering should be applied automatically.

filter

A vector of filter statistics over which the independent filtering will be optimized. The default is the normalized exon means.

Value

A DEXSeqResults object.

Examples

  data(pasillaDEXSeqDataSet, package="pasilla")
  dxd <- estimateSizeFactors( dxd )
  dxd <- estimateDispersions( dxd )
  dxd <- testForDEU( dxd )
  dxr <- DEXSeqResults( dxd )