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Exports getSequence results to FASTA format

Source: R/biomaRt.R
exportFASTA.Rd

Exports getSequence results to FASTA format

Usage

exportFASTA(sequences, file)

Arguments

sequences

A data.frame that was the output of the getSequence() function

file

File to which you want to write the data

Author

Steffen Durinck

Examples



if(interactive()){
    mart <- useMart("ensembl", dataset="hsapiens_gene_ensembl")

    #seq<-getSequence(chromosome=c(2,2),start=c(100000,30000),end=c(100300,30500),mart=mart)
    #exportFASTA(seq,file="test.fasta")

}