Subset an ome-zarr object — [.ome

Subset operation is applied on all levels of the multiscale ome-zarr object. The result is an ome-zarr object with the same number of levels, but each level is subsetted according to the provided indices.

Usage

# S3 method for class 'ome_zarr'
x[...]

Arguments

x: An ome-zarr object.
...: Indices to subset the ome-zarr object.

Details

The first image is subsetted using the provided indices, and the resulting dimensions are used to subset the remaining levels, while conserving the same scaling factor across levels

Examples

if (FALSE) { # \dontrun{
x <- ome_read(
  "https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0076A/10501752.zarr"
)
y <- x[3, 1:5, 1:5]
extract_levels(y, 2)
plot(y, level = 2)
} # }